Stem-loop esi-MIR3454e

Accession

MI0014683

Description

Ectocarpus siliculosus esi-MIR3454e precursor miRNA

Gene family

MIPF0001097; MIR3454

Sequence

gguggaauucUUCCCAGCUCCGACGGAAUGGcgcucgugguuaguucggccgucuuguaucacgcgagcguuuguauacccgugcgacucaaggcggcggaacuagucacgagcgccCUUCCAUCGGAGCUAGGUAGAaucucacca
(((((.(((((.((.((((((((.((((.((((((((((((((((((.(((((((((..((.((((.(.((......))))))).))..))))))))).)))))))))))))))))).)))).)))))))).)).))))).))))).

Structure

-     a     U  C        C    U                  g         ua  a    a c  uu 
 ggugg auucU CC AGCUCCGA GGAA GGcgcucgugguuaguuc gccgucuug  uc cgcg g gu  g
 ||||| ||||| || |||||||| |||| |||||||||||||||||| |||||||||  || |||| | ||   
 ccacu uaAGA GG UCGAGGCU CCUU ccgcgagcacugaucaag cggcggaac  ag gugc c ca  u
a     c     U  A        A    C                  g         uc  c    - -  ua 

Annotation confidence Not enough data

Genome context

sctg_168: 256040-256186 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from esi-MIR3454e

Mature esi-miR3454e-5p

• Accession: MIMAT0017769
• Description: Ectocarpus siliculosus esi-miR3454e-5p mature miRNA
• Sequence: 11 - UUCCCAGCUCCGACGGAAUGG - 31
• Evidence: experimental ; Illumina [1]

Mature esi-miR3454e-3p

• Accession: MIMAT0017770
• Description: Ectocarpus siliculosus esi-miR3454e-3p mature miRNA
• Sequence: 118 - CUUCCAUCGGAGCUAGGUAGA - 138
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20520714
   The Ectocarpus genome and the independent evolution of multicellularity in brown algae
   "Cock JM, Sterck L, Rouze P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collen J, Corre E, Da Sil"
   "Nature (2010) 465:617-621