miRBase entry: ppy-mir-424

Stem-loop ppy-mir-424

Accession

MI0014940

Description

Pongo pygmaeus ppy-mir-424 precursor miRNA

Gene family

MIPF0000164; mir-322

Sequence

cgaggggauaCAGCAGCAAUUCAUGUUUUGAAguguucuaaaugguucaaaacgugaggcgcugcuauacccccucguggggaagguagaaggugggg
(((((((.((.((((((..(((((((((((((.((((...)))).)))))))))))))..)))))).)).))))))).....................

Structure

---------------------       a  C      AA             g    c 
                     cgagggg ua AGCAGC  UUCAUGUUUUGAA uguu  
                     ||||||| || ||||||  ||||||||||||| |||| u
                     gcucccc au ucgucg  gagugcaaaacuu guaa  
gggguggaagauggaaggggu       c  a      cg             g    a

Annotation confidence Not enough data

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Genome context

chrX: 134005869-134005966 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppy-mir-424

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-424

Accession	MIMAT0015884
Description	Pongo pygmaeus ppy-miR-424 mature miRNA
Sequence	11 - CAGCAGCAAUUCAUGUUUUGAA - 32
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64