Stem-loop cin-mir-9

Accession

MI0015482

Description

Ciona intestinalis cin-mir-9 precursor miRNA

Literature search

2 open access papers mention cin-mir-9
(3 sentences)

Sequence

44 reads, 19 reads per million, 2 experiments

UCUUUGGUUAUCCAGUUUGAugccacacacugcaccggacuaaaugaccaaagu
.((((((((((..((((((.(((........))).))))))..)))))))))).

Structure

U          CC      A   cac 
 CUUUGGUUAU  AGUUUG ugc   a
 ||||||||||  |||||| |||    
 gaaaccagua  ucaggc acg   c
u          aa      c   uca 

Annotation confidence Not enough data

Genome context

5q: 5965526-5965579 [-]

Mature cin-miR-9-5p

• Accession: MIMAT0016396
• Description: Ciona intestinalis cin-miR-9-5p mature miRNA
• Sequence: 1 - UCUUUGGUUAUCCAGUUUGA - 20
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39