Stem-loop cin-mir-1502b

Accession

MI0015542

Description

Ciona intestinalis cin-mir-1502b precursor miRNA

Sequence

28072 reads, 11254 reads per million, 2 experiments

UGAACUUUACCACGAAAAGGucugucauauauaacacAGACUUUUCAGGUAGUUCAC
((((((..(((..((((((.(((((..........))))))))))).))))))))).

Structure

-      UU   AC      G     caua 
 UGAACU  ACC  GAAAAG ucugu    u
 ||||||  |||  |||||| |||||     
 ACUUGA  UGG  CUUUUC AGAca    a
C      --   -A      -     caau 

Annotation confidence Not enough data

Genome context

3p: 1538677-1538733 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from cin-mir-1502b

Mature cin-miR-1502b-5p

• Accession: MIMAT0016489
• Description: Ciona intestinalis cin-miR-1502b-5p mature miRNA
• Sequence: 1 - UGAACUUUACCACGAAAAGG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-1502b-3p

• Accession: MIMAT0016490
• Description: Ciona intestinalis cin-miR-1502b-3p mature miRNA
• Sequence: 38 - AGACUUUUCAGGUAGUUCAC - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39