Stem-loop cin-mir-4017-1

Accession

MI0015565

Description

Ciona intestinalis cin-mir-4017-1 precursor miRNA

Sequence

708 reads, 234 reads per million, 2 experiments

UGUGCUGUAUAUGCACUUCUauguauuuaauuuuaUAAGUGCAUGUAUGGUGCUA
.(((((((((((((((((.((............)).)))))))))))))))))..

Structure

-U                 C  uguau 
  GUGCUGUAUAUGCACUU Ua     u
  ||||||||||||||||| ||      
  CGUGGUAUGUACGUGAA au     u
AU                 U  uuuaa 

Annotation confidence Not enough data

Genome context

1q: 826440-826494 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cin-mir-4017-1

Mature cin-miR-4017-5p

• Accession: MIMAT0016524
• Description: Ciona intestinalis cin-miR-4017-5p mature miRNA
• Sequence: 1 - UGUGCUGUAUAUGCACUUCU - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4017-3p

• Accession: MIMAT0016525
• Description: Ciona intestinalis cin-miR-4017-3p mature miRNA
• Sequence: 36 - UAAGUGCAUGUAUGGUGCUA - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39