miRBase entry: cin-mir-4029

Stem-loop cin-mir-4029


Accession
MI0015580
Description
Ciona intestinalis cin-mir-4029 precursor miRNA


Sequence

101756 reads, 35413 reads per million, 2 experiments
AAAGUGCAACUGUGUAAACCugauuauacugcagGUUUACAUUGCAUGCACUUA
.(((((((...(((((((((((.........)))))))))))....))))))).

Structure
A       -ACU           auu 
 AAGUGCA    GUGUAAACCug   a
 |||||||    |||||||||||   u
 UUCACGU    UACAUUUGgac   a
A       ACGU           guc 


Annotation confidence High
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Genome context
14q: 1295076-1295129 [+]

Database links

Mature cin-miR-4029-5p

Accession MIMAT0016547
Description Ciona intestinalis cin-miR-4029-5p mature miRNA
Sequence 1 - AAAGUGCAACUGUGUAAACC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4029-3p

Accession MIMAT0016548
Description Ciona intestinalis cin-miR-4029-3p mature miRNA
Sequence 35 - GUUUACAUUGCAUGCACUUA - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39