miRBase entry: cbr-mir-357-2

Stem-loop cbr-mir-357-2

Accession

MI0015958

Description

Caenorhabditis briggsae cbr-mir-357-2 precursor miRNA

Sequence

cuacaucagaagagacagcgaaucccggcaaucaccgugcauuuucaucuaccagaggcacuaaugAAAAUGCCAGUCAUUGACGGAauucguugaaucuggaauuaaagcau
..........(((..((((((((.(((.((((.((.(.((((((((((...((...)).....))))))))))).)).)))).))).))))))))..))).............

Structure

---cuacaucaga   ga        c   g    c  c u          --cua  a 
             aga  cagcgaau ccg caau ac g gcauuuucau     cc  
             |||  |||||||| ||| |||| || | ||||||||||     || g
             ucu  guugcuua GGC GUUA UG C CGUAAAAgua     gg  
uacgaaauuaagg   aa        A   A    C  A -          aucac  a

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.

Genome context

chrV: 1198325-1198437 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-357-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbr-miR-357

Accession	MIMAT0001298
Description	Caenorhabditis briggsae cbr-miR-357 mature miRNA
Sequence	67 - AAAAUGCCAGUCAUUGACGGA - 87
Evidence	not_experimental

References

PubMed ID: 15317971
Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification
"Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB"
"RNA (2004) 10:1309-1322