Stem-loop tca-mir-2796

Accession

MI0016303

Description

Tribolium castaneum tca-mir-2796 precursor miRNA

Sequence

aucgagcuuucggugcagaagccgcuauuaacguggugacgcaagaguAGGGGUUUCUUUCGGCCUCCAGCGgauaauaaagaguuGUAGGCCGGCGGAAACUACUUGCuuuuacguugcauuaccuucgcugcggcuucccgucaaugaugcguuuu
(((((....)))))(((((((((((.......(((((((((.((((((((((((((((.(((((((.((((............)))).))))))).))))))).))))))))).)))..)))))).......))))))))..........))).....

Structure

aucgagcuuucggu   ----------        uauuaac      --   c         -       U       C    Ggaua 
              gca          gaagccgc       guggug  acg aagaguAGG GGUUUCU UCGGCCU CAGC     a
              |||          ||||||||       ||||||  ||| ||||||||| ||||||| ||||||| ||||      
              cgu          cuucggcg       cauuac  ugc uuuuCGUUC UCAAAGG GGCCGGA Guug     u
---------uuuug   aguaacugcc        ucgcuuc      gu   a         A       C       U    agaaa 

Annotation confidence Not enough data

Genome context

ChLG2: 14198660-14198817 [-]

Mature tca-miR-2796-5p

• Accession: MIMAT0018712
• Description: Tribolium castaneum tca-miR-2796-5p mature miRNA
• Sequence: 49 - AGGGGUUUCUUUCGGCCUCCAGCG - 72
• Evidence: experimental ; SOLID [1]

Mature tca-miR-2796-3p

• Accession: MIMAT0018713
• Description: Tribolium castaneum tca-miR-2796-3p mature miRNA
• Sequence: 87 - GUAGGCCGGCGGAAACUACUUGC - 109
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696