Stem-loop tcc-MIR156d

Accession

MI0017456

Description

Theobroma cacao tcc-MIR156d precursor miRNA

Gene family

MIPF0000008; MIR156

Sequence

gaccaggucugucaggaaggUGACAGAAGAGAGUGAGCACacaggguucuuucuugcaugagugccucaugcuugaaacuuuaugugcuugcucuccuuccgucacccgccucuuucucuccccc
(((.......)))(((..((((((.((((((((((((((((.((((((...((..(((((((...)))))))..)))))))).)))))))))))).)))).))))))..))).............

Structure

gaccaggucuguc   aa      A    -            c      cuu  uu       u 
             agg  ggUGAC GAAG AGAGUGAGCACa aggguu   uc  gcaugag  
             |||  |||||| |||| |||||||||||| ||||||   ||  ||||||| g
             ucc  ccacug cuuc ucucguucgugu uuucaa   ag  cguacuc  
cccccucucuuuc   gc      c    c            a      ---  uu       c 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR156d

• Accession: MIMAT0020372
• Description: Theobroma cacao tcc-miR156d mature miRNA
• Sequence: 21 - UGACAGAAGAGAGUGAGCAC - 40
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108