Stem-loop tcc-MIR172e

Accession

MI0017501

Description

Theobroma cacao tcc-MIR172e precursor miRNA

Gene family

MIPF0000035; MIR172

Sequence

uugacagucguuguuugcggguguagcaucaucaagauucacaugcaaaugcacggugguggugauggauaauacaaacucucuucuuuuuuucuccccuuccccuuucuuuucccuucuccuuuaugccaaaguuguuuggaaagugAGAAUCUUGAUGAUGCUGCAUcggcaauaaacgacuauaca
.....(((((((..((((.(((((((((((((((((((((...(((....))).((.((.((.((.(((......................))))).))..))))..((((((((...(..((((.....))))..)...)))))).))))))))))))))))))))))).))))..))))))).....

Structure

uugac       gu    g                     acaugcaaaugcacggugguggugauggauaauacaaacucucuucuuuuuuucuccccuuccccuu  -      cuu uc    a 
     agucguu  uugc gguguagcaucaucaagauuc                                                                   uc uuuucc   c  cuuu u
     |||||||  |||| |||||||||||||||||||||                                                                   || ||||||   |  |||| g
     ucagcaa  aacg cUACGUCGUAGUAGUUCUAAG                                                                   Ag gaaagg   g  gaaa c
acaua       au    g                     -------------------------------------------------------------------  u      uuu uu    c 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR172e

• Accession: MIMAT0020417
• Description: Theobroma cacao tcc-miR172e mature miRNA
• Sequence: 149 - AGAAUCUUGAUGAUGCUGCAU - 169
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108