Stem-loop tcc-MIR390a

Accession

MI0017503

Description

Theobroma cacao tcc-MIR390a precursor miRNA

Gene family

MIPF0000101; MIR390

Sequence

uuaguauagaagagccuguuAAGCUCAGGAGGGAUAGCGCCauugaugaucuugaaucuuauggauuguauaaucugauccucauuagcgcuauccauccugaguuucaucgguucuucuugcucuugc
..((((.(((((((((.((.((((((((((.(((((((((...(((.((((..((...(((((.....))))))).)))).)))...))))))))).)))))))))).)).))))))))))))).....

Structure

---uu    u         u  u          G         Cau   u    uu  auc     g 
     agua agaagagcc gu AAGCUCAGGA GGAUAGCGC   uga gauc  ga   uuaug a
     |||| ||||||||| || |||||||||| |||||||||   ||| ||||  ||   ||||| u
     ucgu ucuucuugg ua uuugaguccu ccuaucgcg   acu cuag  cu   aauau u
cguuc    -         c  c          a         auu   c    -u  ---     g 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR390a

• Accession: MIMAT0020419
• Description: Theobroma cacao tcc-miR390a mature miRNA
• Sequence: 21 - AAGCUCAGGAGGGAUAGCGCC - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108