Stem-loop emu-mir-2b

Accession

MI0017800

Description

Echinococcus multilocularis emu-mir-2b precursor miRNA

Gene family

MIPF0000049; mir-2

Sequence

ugucagucggUGUCCCAAGGGUGGUGAUCUACUcaguuggagUAUCACAGCCCUGCUUGGGACAcaugcuggcagc
(((((((..(((((((((((((.((((..(((((.....))))))))).)))))...))))))))..)))))))..

Structure

--       cg        ---     G    UC     a 
  ugucagu  gUGUCCCA   AGGGU GUGA  UACUc g
  |||||||  ||||||||   ||||| ||||  ||||| u
  acggucg  cACAGGGU   UCCCG CACU  AUgag u
cg       ua        UCG     A    --     g 

Annotation confidence Not enough data

Genome context

scaffold_007728: 10027294-10027369 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from emu-mir-2b

Mature emu-miR-2b-3p

• Accession: MIMAT0020256
• Description: Echinococcus multilocularis emu-miR-2b-3p mature miRNA
• Sequence: 43 - UAUCACAGCCCUGCUUGGGACA - 64
• Evidence: experimental ; Illumina [2]

Mature emu-miR-2b-5p

• Accession: MIMAT0037436
• Description: Echinococcus multilocularis emu-miR-2b-5p mature miRNA
• Sequence: 11 - UGUCCCAAGGGUGGUGAUCUACU - 33
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21219906
   Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
   "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
   "Int J Parasitol (2011) 41:439-448


2. PubMed ID: 25659494
   High-throughput characterization of Echinococcus spp. metacestode miRNomes
   "Cucher M, Macchiaroli N, Kamenetzky L, Maldonado L, Brehm K, Rosenzvit MC"
   "Int J Parasitol (2015) 45:253-267