Stem-loop ath-MIR5016

Accession

MI0017884

Description

Arabidopsis thaliana ath-MIR5016 precursor miRNA

Sequence

ggagauuuuguucccugaguuucagucuacaaagaauccauaacgaugacuucguuuuucggucguuaaauuagguaaauauuuuugaccauaucgaaauacaaagucauccacauuuagauguggucaaaaauaucuaccugauuaauggacggaaugacaaagucaUUCUUGUGGAUUCCUUGGAAAuugaaugucaaggaacagauguucu
((((..((((((((.(((..((((((...(((.((((((((((.((((((((.(((.(((.(((....(((((((((.(((((((((((((((((.((((..............)))).))))))))))))))))).)))))))))....))).))).))).)))))))).)))))))))).)))...))))))..))).))))))))..))))

Structure

    au        c   gu      cua   a          c        c   u   g   guua         a                 g    acaaag 
ggag  uuuguucc uga  uucagu   caa gaauccauaa gaugacuu guu uuc guc    aauuaggua auauuuuugaccauauc aaau      u
||||  |||||||| |||  ||||||   ||| |||||||||| |||||||| ||| ||| |||    ||||||||| ||||||||||||||||| ||||       
ucuu  agacaagg acu  aaguuA   GUU CUUAGGUGUU UUacugaa cag aag cag    uuaguccau uauaaaaacugguguag uuua      c
    gu        a   gu      AAG   C          C        a   u   g   guaa         c                 a    caccua 

Annotation confidence Not enough data

Genome context

chr2: 9919984-9920197 [+]

Mature ath-miR5016

• Accession: MIMAT0020520
• Description: Arabidopsis thaliana ath-miR5016 mature miRNA
• Sequence: 169 - UUCUUGUGGAUUCCUUGGAAA - 189
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620