miRBase entry: mtr-MIR2592an

Stem-loop mtr-MIR2592an


Accession
MI0018276
Description
Medicago truncatula mtr-MIR2592an precursor miRNA

Literature search
1 open access papers mention mtr-MIR2592an
(2 sentences)

Sequence

aaaccugccaaacaacaggacucgagcauuucgcucggcauucauguuuuuccuuugaaaagauuaaauucuuguuaggcugguuuagauguagguauuaagugugaaggaaugaaccucauuucguuggcacuugaauaccagcgucuaaagcacgccuaacaaaaauuuauucuuuucaaaggaaaacaugaaugccgggugAAAUGCUUGAGUCCUGUUGUUuugcagguuu
((((((((.(((((((((((((((((((((((((((((((((((((((((.((((((((((((.((((((.(((((((((((.(((((((((.((((((((((((.(((((((((...))))))).)).))))))).))))).))))))))).)).))))))))).)))))).))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))

Structure
        c                                         u            u      c         -  g         a     -       g  -       a 
aaaccugc aaacaacaggacucgagcauuucgcucggcauucauguuuu ccuuugaaaaga uaaauu uuguuaggc ug uuuagaugu gguau uaagugu aa ggaauga  
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| || ||||||||| ||||| ||||||| || ||||||| c
uuuggacg uUUGUUGUCCUGAGUUCGUAAAgugggccguaaguacaaaa ggaaacuuuucu auuuaa aacaauccg ac aaaucugcg ccaua guucacg uu cuuuacu  
        u                                         -            u      a         c  g         a     a       g  g       c 


Annotation confidence Not enough data
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Genome context
chr2: 28800456-28800690 [-]

Database links

Mature mtr-miR2592an

Accession MIMAT0021170
Description Medicago truncatula mtr-miR2592an mature miRNA
Sequence 205 - AAAUGCUUGAGUCCUGUUGUU - 225
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010