Stem-loop isc-mir-5307

Accession

MI0018486

Description

Ixodes scapularis isc-mir-5307 precursor miRNA

Literature search

1 open access papers mention isc-mir-5307
(2 sentences)

Sequence

ugcacuggcgccuuccggaggccUAAUCUCAUUUGGUAUCUCUGGGgggcugagcgacguccaggguaccagaugagauggggucucggggagcaccuccaugcaugacg
((((.(((.(.(((((.(((((((.(((((((((((((((.(((((.(.........).)))))))))))))))))))).))))))).)))))...).))))))).....

Structure

-----    c   c --c     g       A               U     g gcu 
     ugca ugg g   cuucc gaggccU AUCUCAUUUGGUAUC CUGGG g   g
     |||| ||| |   ||||| ||||||| ||||||||||||||| ||||| |   a
     acgu acc c   gaggg cucuggg uagaguagaccaugg gaccu c   g
gcagu    -   u cac     g       g               -     g agc 

Annotation confidence Not enough data

Genome context

DS942119: 46308-46417 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from isc-mir-5307

Mature isc-miR-5307

• Accession: MIMAT0021377
• Description: Ixodes scapularis isc-miR-5307 mature miRNA
• Sequence: 24 - UAAUCUCAUUUGGUAUCUCUGGG - 46
• Evidence: not_experimental

References

1. PubMed ID: 21699734
   Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
   Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
   BMC Genomics (2011) 12:328