Stem-loop asu-lin-4

Accession

MI0018524

Description

Ascaris suum asu-lin-4 precursor miRNA

Gene family

MIPF0000303; lin-4

Literature search

0 open access papers mention asu-lin-4
(0 sentences)

Sequence

uugcgaccuucUCCCUGAGACCUCUGCUGUGAcaguacgcagggucACAGUAAGAGCACCUCAGGGGCCaggucuca
.((.(((((..((((((((..((((((((((((..........)))))))).))))...))))))))..))))).))

Structure

u  c     uc        -AC    -        agua 
 ug gaccu  UCCCUGAG   CUCU GCUGUGAc    c
 || |||||  ||||||||   |||| ||||||||     
 ac cugga  GGGGACUC   GAGA UGACAcug    g
-  u     CC        CAC    A        ggac 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-lin-4-5p

• Accession: MIMAT0021415
• Description: Ascaris suum asu-lin-4-5p mature miRNA
• Sequence: 12 - UCCCUGAGACCUCUGCUGUGA - 32
• Evidence: experimental ; Illumina [1]

Mature asu-lin-4-3p

• Accession: MIMAT0021416
• Description: Ascaris suum asu-lin-4-3p mature miRNA
• Sequence: 47 - ACAGUAAGAGCACCUCAGGGGCC - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477