Stem-loop asu-mir-5342

Accession

MI0018578

Description

Ascaris suum asu-mir-5342 precursor miRNA

Sequence

ugacuugagugcauuACUCGUCAACCAGUAAUAUUAUGuuuuaaugaccaUAAUAUCACUGGCUUACGGGAAAuggccuuuggu
..(((.(((..((((.(((((...(((((.((((((((.((....)).)))))))).)))))...))))).))))..))).)))

Structure

ug   u   ug    A     CAA     A        u  u 
  acu gag  cauu CUCGU   CCAGU AUAUUAUG uu a
  ||| |||  |||| |||||   ||||| |||||||| ||  
  ugg uuc  guAA GGGCA   GGUCA UAUAAUac ag a
--   u   cg    A     UUC     C        c  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-5342-5p

• Accession: MIMAT0021517
• Description: Ascaris suum asu-miR-5342-5p mature miRNA
• Sequence: 16 - ACUCGUCAACCAGUAAUAUUAUG - 38
• Evidence: experimental ; Illumina [1]

Mature asu-miR-5342-3p

• Accession: MIMAT0021518
• Description: Ascaris suum asu-miR-5342-3p mature miRNA
• Sequence: 51 - UAAUAUCACUGGCUUACGGGAAA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477