Stem-loop asu-mir-5348

Accession

MI0018594

Description

Ascaris suum asu-mir-5348 precursor miRNA

Sequence

cuagguacgugaCAGAAGUUGAGUCUAGUUGAGAcugauauguuucUCACCGGGCAACAACUUCUGUCucgugguaguag
(((..((((.(((((((((((.((((.((.(((((......)))))..)).))))..))))))))))).)))).)))...

Structure

---   gg    u           -A    A  -U     ug 
   cua  uacg gaCAGAAGUUG  GUCU GU  GAGAc  a
   |||  |||| |||||||||||  |||| ||  |||||   
   gau  gugc CUGUCUUCAAC  CGGG CA  cuuug  u
gau   -g    u           AA    C  CU     ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-5348-5p

• Accession: MIMAT0021548
• Description: Ascaris suum asu-miR-5348-5p mature miRNA
• Sequence: 13 - CAGAAGUUGAGUCUAGUUGAGA - 34
• Evidence: experimental ; Illumina [1]

Mature asu-miR-5348-3p

• Accession: MIMAT0021549
• Description: Ascaris suum asu-miR-5348-3p mature miRNA
• Sequence: 47 - UCACCGGGCAACAACUUCUGUC - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477