Stem-loop asu-mir-5350a

Accession

MI0018596

Description

Ascaris suum asu-mir-5350a precursor miRNA

Sequence

ccgccggaggAGUUUCUCAGGACUGCUAAAUUgugaaucggcuaaUUUGGCACGCCUGAAAAACUACucuuguagg
((((.((((.(((((.(((((..(((((((((((......)).)))))))))..))))).))))).)))).)).))

Structure

  -  c    g     C     AC         -  ga 
cc gc ggag AGUUU UCAGG  UGCUAAAUU gu  a
|| || |||| ||||| |||||  ||||||||| ||   
gg ug ucuC UCAAA AGUCC  ACGGUUUaa cg  u
  a  u    A     A     GC         u  gc 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-5350a-5p

• Accession: MIMAT0021552
• Description: Ascaris suum asu-miR-5350a-5p mature miRNA
• Sequence: 11 - AGUUUCUCAGGACUGCUAAAUU - 32
• Evidence: experimental ; Illumina [1]

Mature asu-miR-5350a-3p

• Accession: MIMAT0021553
• Description: Ascaris suum asu-miR-5350a-3p mature miRNA
• Sequence: 46 - UUUGGCACGCCUGAAAAACUAC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477