miRBase entry: asu-mir-5351

Stem-loop asu-mir-5351


Accession
MI0018600
Description
Ascaris suum asu-mir-5351 precursor miRNA


Sequence

guaccaaguCAGGUUUUACUAAUGACCAAAUUguuucaagcgaaUUUGGCACAUGUAAUACCUGCCuugguugcu
((((((((.(((((.((((...((.((((((((((...))).)))))))))...)))).))))).))))).))).

Structure
-   -     u     U    UAA  A       -   u 
 gua ccaag CAGGU UUAC   UG CCAAAUU guu  
 ||| ||||| ||||| ||||   || ||||||| ||| c
 cgu gguuC GUCCA AAUG   AC GGUUUaa cga  
u   u     C     U    UAC  -       g   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-5351-5p

Accession MIMAT0021560
Description Ascaris suum asu-miR-5351-5p mature miRNA
Sequence 10 - CAGGUUUUACUAAUGACCAAAUU - 32
Evidence experimental
Illumina [1]

Mature asu-miR-5351-3p

Accession MIMAT0021561
Description Ascaris suum asu-miR-5351-3p mature miRNA
Sequence 45 - UUUGGCACAUGUAAUACCUGCC - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477