miRBase entry: aca-mir-130a-2

Stem-loop aca-mir-130a-2

Accession

MI0018734

Description

Anolis carolinensis aca-mir-130a-2 precursor miRNA

Sequence

cacgaggugucuguccaCUGCCCUUUUUAUGUUGUACUacuagugaacaugcgcaaaaagCAGUGCAAUGUUAAAAGGGCAuuggccagcaaugcuc
...(((.((.(((.(((.(((((((((.((((((((((.((.(((......)))....)).)))))))))).))))))))).))).)))))...)))

Structure

cac   --g  u   u   C         U          a  ---a   aa 
   gag   ug cug cca UGCCCUUUU AUGUUGUACU cu    gug  c
   |||   || ||| ||| ||||||||| |||||||||| ||    |||   
   cuc   ac gac ggu ACGGGAAAA UGUAACGUGA ga    cgc  a
---   gua  -   c   u         U          C  aaaa   gu

Annotation confidence Not enough data

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Genome context

GL343684.1: 340805-340901 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-130a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-130a-3p

Accession	MIMAT0021740
Description	Anolis carolinensis aca-miR-130a-3p mature miRNA
Sequence	61 - CAGUGCAAUGUUAAAAGGGCA - 81
Evidence	experimental Illumina [1]

Mature aca-miR-130a-2-5p

Accession	MIMAT0021741
Description	Anolis carolinensis aca-miR-130a-2-5p mature miRNA
Sequence	18 - CUGCCCUUUUUAUGUUGUACU - 38
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107