Stem-loop aca-mir-1a-1

Accession

MI0018799

Description

Anolis carolinensis aca-mir-1a-1 precursor miRNA

Literature search

1 open access papers mention aca-mir-1a-1
(6 sentences)

Sequence

auuaaaccuguugagagcACAUACUUCUUUAUGUACCCAUaugaagauacaauguuaUGGAAUGUAAAGAAGUAUGUAUuuuugauagguacaaac
.....((((((((((((.((((((((((((((((..(((((..............))))).)))))))))))))))).))))))))))))......

Structure

-auuaa            c                AC     ugaaga 
      accuguugagag ACAUACUUCUUUAUGU  CCAUa      u
      |||||||||||| ||||||||||||||||  |||||       
      uggauaguuuuU UGUAUGAAGAAAUGUA  GGUau      a
caaaca            A                -A     uguaac 

Annotation confidence Not enough data

Genome context

chr4: 38859440-38859535 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-1a-1

Mature aca-miR-1a-1-5p

• Accession: MIMAT0021839
• Description: Anolis carolinensis aca-miR-1a-1-5p mature miRNA
• Sequence: 19 - ACAUACUUCUUUAUGUACCCAU - 40
• Evidence: experimental ; Illumina [1]

Mature aca-miR-1a-3p

• Accession: MIMAT0021840
• Description: Anolis carolinensis aca-miR-1a-3p mature miRNA
• Sequence: 58 - UGGAAUGUAAAGAAGUAUGUAU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107