miRBase entry: aca-mir-30b

Stem-loop aca-mir-30b

Accession

MI0018848

Description

Anolis carolinensis aca-mir-30b precursor miRNA

Sequence

uacugauuuuuaguucaUGUAAACAUCCUACACUCAGCUguaucacaugaaauggCUGGGAGAUGAAUGUUUACUUCaacugauuugg
.........((((((...((((((((.(....(((((((((.((....)).)))))))))....).))))))))...)))))).....

Structure

uacugauuu      caU        C UACA         a  a 
         uuaguu   GUAAACAU C    CUCAGCUgu uc c
         ||||||   |||||||| |    ||||||||| ||  
         agucaa   CAUUUGUA G    GGGUCggua ag a
----gguuu      CUU        A UAGA         a  u

Annotation confidence Not enough data

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Genome context

chr4: 1747976-1748063 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-30b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-30b-5p

Accession	MIMAT0021922
Description	Anolis carolinensis aca-miR-30b-5p mature miRNA
Sequence	18 - UGUAAACAUCCUACACUCAGCU - 39
Evidence	experimental Illumina [1]

Mature aca-miR-30b-3p

Accession	MIMAT0021923
Description	Anolis carolinensis aca-miR-30b-3p mature miRNA
Sequence	56 - CUGGGAGAUGAAUGUUUACUUC - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107