miRBase entry: aca-mir-425

Stem-loop aca-mir-425

Accession

MI0018865

Description

Anolis carolinensis aca-mir-425 precursor miRNA

Sequence

gcaggaaugguuuuggAAUGACACGAUCACUCCCGCUgagcgagcagagccacggCCACGGGGAUGUCGUGUCUGUCcaaaacuauuucaaa
...((((((((((((((..(((((((.((.(((((.((.((..((...))....))))))))).)))))))))..))))))))))))))...

Structure

gca              AU       U  C     C  a  --ga  a 
   ggaaugguuuuggA  GACACGA CA UCCCG Ug gc    gc  
   ||||||||||||||  ||||||| || ||||| || ||    || g
   cuuuaucaaaacCU  CUGUGCU GU GGGGC AC Cg    cg  
aaa              GU       -  A     -  -  gcac  a

Annotation confidence Not enough data

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Genome context

chr2: 187863021-187863112 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aca-mir-425

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-425-5p

Accession	MIMAT0021954
Description	Anolis carolinensis aca-miR-425-5p mature miRNA
Sequence	17 - AAUGACACGAUCACUCCCGCU - 37
Evidence	experimental Illumina [1]

Mature aca-miR-425-3p

Accession	MIMAT0021955
Description	Anolis carolinensis aca-miR-425-3p mature miRNA
Sequence	56 - CCACGGGGAUGUCGUGUCUGUC - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107