miRBase entry: aca-mir-449b

Stem-loop aca-mir-449b

Accession

MI0018868

Description

Anolis carolinensis aca-mir-449b precursor miRNA

Sequence

gacugugucgcuuUGGCAGUGCACUACUAGCUGGCuguugagauauauucauuuuuacagugguuaguugcacuccacacugaugcaguc
((((((((((...(((.((((((..((((((..(((((.(((((......))))).))))).)))))))))))))))...))))))))))

Structure

          cuu   C      CU      UG     u     au 
gacugugucg   UGG AGUGCA  ACUAGC  GCugu gagau  a
||||||||||   ||| ||||||  ||||||  ||||| |||||   
cugacguagu   acc ucacgu  ugauug  ugaca uuuua  u
          cac   -      --      -g     u     cu

Annotation confidence Not enough data

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Genome context

chr2: 2663679-2663768 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from aca-mir-449b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-449b

Accession	MIMAT0021959
Description	Anolis carolinensis aca-miR-449b mature miRNA
Sequence	14 - UGGCAGUGCACUACUAGCUGGC - 35
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107