Stem-loop ssl-MIR398

Accession

MI0019353

Description

Salvia sclarea ssl-MIR398 precursor miRNA

Gene family

MIPF0000107; MIR398

Sequence

gaagagugaugcugagaacacauguggauuacuggaugcauuaguccacuUGUGUUCUCAGGUCACCCCUC
.....(((((.(((((((((((.((((((((.((....)).)))))))).)))))))))))))))).....

Structure

gaaga     g           u        c  g 
     gugau cugagaacaca guggauua ug a
     ||||| ||||||||||| |||||||| ||  
     CACUG GACUCUUGUGU caccugau ac u
CUCCC     -           u        u  g 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssl-miR398

• Accession: MIMAT0022519
• Description: Salvia sclarea ssl-miR398 mature miRNA
• Sequence: 51 - UGUGUUCUCAGGUCACCCCUC - 71
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19840835
   One-step identification of conserved miRNAs, their targets, potential transcription factors and effector genes of complete secondary metabolism pathways after 454 pyrosequencing of calyx cDNAs from the Labiate Salvia sclarea L
   "Legrand S, Valot N, Nicole F, Moja S, Baudino S, Jullien F, Magnard JL, Caissard JC, Legendre L"
   "Gene (2010) 450:55-62