Stem-loop tur-mir-278

Accession

MI0019360

Description

Tetranychus urticae tur-mir-278 precursor miRNA

Sequence

gggauucggguaaagugcaaACGGAUAAAUAUUCCACCGAUAcucuugauuauuuaccuugaaUCGGUGGGAUUUUCGUCCGUCugcaaguugcucuguuuaucua
.((((.(((((((..((((.((((((.((.(((((((((((..((..(.........)..))))))))))))).)).)))))).))))..)))).)))...)))).

Structure

g    --u   -    ag    a      A  U           Ac  uu auu 
 ggau   cgg guaa  ugca ACGGAU AA AUUCCACCGAU  uc  g   a
 ||||   ||| ||||  |||| |||||| || |||||||||||  ||  |   u
 ucua   guc cguu  acgu UGCCUG UU UAGGGUGGCUa  ag  c   u
a    uuu   u    ga    C      C  U           --  uu cau 

Annotation confidence Not enough data

Genome context

Unknown

Mature tur-miR-278-5p

• Accession: MIMAT0023030
• Description: Tetranychus urticae tur-miR-278-5p mature miRNA
• Sequence: 21 - ACGGAUAAAUAUUCCACCGAUA - 42
• Evidence: experimental ; Illumina [1]

Mature tur-miR-278-3p

• Accession: MIMAT0023031
• Description: Tetranychus urticae tur-miR-278-3p mature miRNA
• Sequence: 64 - UCGGUGGGAUUUUCGUCCGUC - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492