Stem-loop tur-mir-1

Accession

MI0019395

Description

Tetranychus urticae tur-mir-1 precursor miRNA

Gene family

MIPF0000038; mir-1

Literature search

1 open access papers mention tur-mir-1
(1 sentences)

Sequence

gugauuugauuaggacaCAUACUUCUGGACAUACCAUAuuuugauauugaauuguaUGGAAUGUAAAGAAGUAUGGAGugcuuucaauucaa
.(((.((((..((.((.(((((((((..((((.((((((..(........)..)))))).))))..)))))))))..)).)).)))).))).

Structure

g   u    uu  g  -a         GG    A      uu gau 
 uga uuga  ag ac  CAUACUUCU  ACAU CCAUAu  u   a
 ||| ||||  || ||  |||||||||  |||| ||||||  |    
 acu aacu  uc uG  GUAUGAAGA  UGUA GGUaug  a   u
a   u    -u  g  AG         AA    A      uu agu 

Annotation confidence Not enough data

Genome context

Unknown

Mature tur-miR-1-5p

• Accession: MIMAT0023094
• Description: Tetranychus urticae tur-miR-1-5p mature miRNA
• Sequence: 18 - CAUACUUCUGGACAUACCAUA - 38
• Evidence: experimental ; Illumina [1]

Mature tur-miR-1-3p

• Accession: MIMAT0023095
• Description: Tetranychus urticae tur-miR-1-3p mature miRNA
• Sequence: 57 - UGGAAUGUAAAGAAGUAUGGAG - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492