Stem-loop ola-mir-140

Accession

MI0019434

Description

Oryzias latipes ola-mir-140 precursor miRNA

Gene family

MIPF0000085; mir-140

Literature search

1 open access papers mention ola-mir-140
(1 sentences)

Sequence

ugucuccggugucacguCAGUGGUUUUACCCUAUGGUAGgugacaucaugcuguucuACCACAGGGUAGAACCACGGacgggauguugggaggug
..(((((.(.(((.((((.(((((((((((((.((((((..((((......)))))))))).))))))))))))).)))).)))..).)))))..

Structure

ug     g -u   a    A             A      gu    uc 
  ucucc g  guc cguC GUGGUUUUACCCU UGGUAG  gaca  a
  ||||| |  ||| |||| ||||||||||||| ||||||  ||||   
  ggagg u  uag gcaG CACCAAGAUGGGA ACCAuc  uugu  u
gu     g ug   g    G             C      --    cg 

Annotation confidence Not enough data

Genome context

6: 22770458-22770552 [+]

Mature ola-miR-140-5p

• Accession: MIMAT0022552
• Description: Oryzias latipes ola-miR-140-5p mature miRNA
• Sequence: 18 - CAGUGGUUUUACCCUAUGGUAG - 39
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-140-3p

• Accession: MIMAT0022553
• Description: Oryzias latipes ola-miR-140-3p mature miRNA
• Sequence: 58 - ACCACAGGGUAGAACCACGG - 77
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8