Stem-loop bna-MIR395d

Accession

MI0020286

Description

Brassica napus bna-MIR395d precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

6 open access papers mention bna-MIR395d
(19 sentences)

Sequence

gcccccaugaguucccuuuaacgcuucauugugauuacuccagucacauuuauuuuucuuaaauguuuggucgauuuuuguauacaacaCUGAAGUGUUUGGGGGGACUCguggugc
((..((((((((((((((.(((((((((.(((...(((...(((((((((((.......)))))))......))))...)))....))).))))))))).)))))))))))))).))

Structure

  cc              u         u   -gau   ucc    ------       uu 
gc  ccaugaguucccuu aacgcuuca ugu    uac   aguc      acauuua  u
||  |||||||||||||| ||||||||| |||    |||   ||||      |||||||  u
cg  ggugCUCAGGGGGG UUGUGAAGU aca    aug   uuag      uguaaau  u
  -u              U         C   acau   uuu    cugguu       uc 

Annotation confidence Not enough data

Genome context

EM:AC189385: 85486-85602 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bna-MIR395d

Mature bna-miR395d

• Accession: MIMAT0023639
• Description: Brassica napus bna-miR395d mature miRNA
• Sequence: 90 - CUGAAGUGUUUGGGGGGACUC - 110
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823