Stem-loop cfa-mir-1199

Accession

MI0020342

Description

Canis familiaris cfa-mir-1199 precursor miRNA

Gene family

MIPF0001659; mir-1199

Sequence

agccugcgccgaagccggggCCUGAGCCCAGGCCGCGCAGgccgagaacucgucgagcugcgugUGCGGCCGGUGCUCAGCCUGCcgggucccggccccgcgcucccgcgcgcuuugga
..((.((((((.(((((((((((((((((.(((((((((.(((((.......)))....)).))))))))))).)))))((((...))))...))))))).)))..)).))))...)).

Structure

ag  --u    -  -a   -       --------------     -  A         G  ----   ga 
  cc   gcgc cg  agc cggggCC              UGAGC CC GGCCGCGCA gc    cga  a
  ||   |||| ||  ||| |||||||              ||||| || ||||||||| ||    |||  c
  gg   cgcg gc  ucg gccccgg              ACUCG GG CCGGCGUgu cg    gcu  u
-a  uuu    c  cc   c       cccugggcCGUCCG     U  -         g  ucga   gc 

Annotation confidence Not enough data

Genome context

chr20: 48441016-48441134 [-]

Mature cfa-miR-1199-5p

• Accession: MIMAT0031123
• Description: Canis familiaris cfa-miR-1199-5p mature miRNA
• Sequence: 21 - CCUGAGCCCAGGCCGCGCAG - 40
• Evidence: not_experimental

Mature cfa-miR-1199-3p

• Accession: MIMAT0031124
• Description: Canis familiaris cfa-miR-1199-3p mature miRNA
• Sequence: 65 - UGCGGCCGGUGCUCAGCCUGC - 85
• Evidence: not_experimental

References

1. PubMed ID: 23229173
   Human hepatocellular carcinoma cell-specific miRNAs reveal the differential expression of miR-24 and miR-27a in cirrhotic/non-cirrhotic HCC
   Salvi A, Abeni E, Portolani N, Barlati S, De Petro G
   Int J Oncol (2013) 42:391-402