Stem-loop cgr-mir-410

Accession

MI0020521

Description

Cricetulus griseus cgr-mir-410 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

4814 reads, 70 reads per million, 6 experiments

cuugaggagAGGUUGUCUGUGAUGAGUUCGcuuuauuaaugacgAAUAUAACACAGAUGGCCUGUuuucaauacc
.(((((((.((((((((((((.((.((((((.........).))))).)).)))))))))))).)))))))....

Structure

---c       g            A  A     - uuu 
    uugagga AGGUUGUCUGUG UG GUUCG c   a
    ||||||| |||||||||||| || ||||| |   u
    aacuuuU UCCGGUAGACAC AU UAAgc g   u
ccau       G            A  A     a uaa 

Annotation confidence Low

Genome context

JH000884.1: 73630-73704 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cgr-mir-410

Mature cgr-miR-410-5p

• Accession: MIMAT0023952
• Description: Cricetulus griseus cgr-miR-410-5p mature miRNA
• Sequence: 10 - AGGUUGUCUGUGAUGAGUUCG - 30
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-410-3p

• Accession: MIMAT0023953
• Description: Cricetulus griseus cgr-miR-410-3p mature miRNA
• Sequence: 45 - AAUAUAACACAGAUGGCCUGU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75