Stem-loop cca-MIR6106

Accession

MI0021091

Description

Cynara cardunculus cca-MIR6106 precursor miRNA

Sequence

gUUGCAAGUAUCCGGAUUUAAAaccauuaucaacuuuauauccuccaacauugaccauauucaccaaugcaucaacaaguuugccgucuucgauuuucgaacaauuuugguacuuacgaccauuguuuuuaucugucauauggucaauguugcaggauauaaagcugauaauggcuUUAAAUCCGGAUACUUGCAACauuuggaacaagc
((((((((((((((((((((((.(((((((((.(((((((((((.(((((((((((((((.((.(((((..((...((((..((((..(((((...)))))......))))))))..)).)))))........))..))))))))))))))).))))))))))).))))))))).)))))))))))))))))))))).............

Structure

-------------                      a         a           c               -u  -------c     ca  aac    uu    ----uc     u 
             gUUGCAAGUAUCCGGAUUUAAA ccauuauca cuuuauauccu caacauugaccauau  ca        caaug  uc   aagu  gccg      uucga  
             |||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||  ||        |||||  ||   ||||  ||||      ||||| u
             CAACGUUCAUAGGCCUAAAUUu gguaauagu gaaauauagga guuguaacugguaua  gu        guuac  ag   uuca  uggu      aagcu  
cgaacaagguuua                      c         c           c               cu  cuauuuuu     -c  -ca    --    uuuaac     u 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR6106-5p

• Accession: MIMAT0024539
• Description: Cynara cardunculus cca-miR6106-5p mature miRNA
• Sequence: 2 - UUGCAAGUAUCCGGAUUUAAA - 22
• Evidence: experimental ; Illumina [1]

Mature cca-miR6106-3p

• Accession: MIMAT0024540
• Description: Cynara cardunculus cca-miR6106-3p mature miRNA
• Sequence: 177 - UUAAAUCCGGAUACUUGCAAC - 197
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41