Stem-loop pgi-MIR6135a

Accession

MI0021293

Description

Panax ginseng pgi-MIR6135a precursor miRNA

Gene family

MIPF0001644; MIR6135

Literature search

1 open access papers mention pgi-MIR6135a
(3 sentences)

Sequence

augaaguuauuuuuuUGGUAAGUUGGUCAAUUGGCcaauaaaauacugacacacauacaacuucgucugcgugugaguauucuauugucaauugaccaacuuauccaaaaauaaacuucau
((((((((...((((((((((((((((((((((((.((((.((((((.((((.((.((......)).)).)))).)))))).))))))))))))))))))))).)))))))..))))))))

Structure

        auu       -                 c    a      g    a  u  aa 
augaaguu   uuuuUGG UAAGUUGGUCAAUUGGC aaua aauacu acac ca ac  c
||||||||   ||||||| ||||||||||||||||| |||| |||||| |||| || ||   
uacuucaa   aaaaacc auucaaccaguuaacug uuau uuauga ugug gu ug  u
        -au       u                 -    c      g    c  c  cu 

Annotation confidence Not enough data

Genome context

Unknown

Mature pgi-miR6135a

• Accession: MIMAT0027241
• Description: Panax ginseng pgi-miR6135a mature miRNA
• Sequence: 16 - UGGUAAGUUGGUCAAUUGGC - 35
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22962612
   High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
   Wu B, Wang M, Ma Y, Yuan L, Lu S
   PLoS One (2012) 7:e44385