Stem-loop pgi-MIR6143b

Accession

MI0021318

Description

Panax ginseng pgi-MIR6143b precursor miRNA

Gene family

MIPF0001685; MIR6143

Literature search

1 open access papers mention pgi-MIR6143b
(11 sentences)

Sequence

gguuagcaugaagauaaagugaacuucauaguaguaaguuuauuucaugauuaauACAAUGUCGACACGCAGGCGGAGAgaucauccucucgccuguguguCAGCACUGUAUUGAACAUGAaauuaugaugaauuucauuucaugcugacc
((((((((((((......(((((.(((((.(((((........((((((.((((((((.(((.((((((((((((.((((......)))))))))))))))).))).)))))))).))))))))))).))))).)))))))))))))))))

Structure

            gauaaa     c     a     aaguuuau      a        A   C            G    au 
gguuagcaugaa      gugaa uucau guagu        uucaug uuaauACA UGU GACACGCAGGCG AGAg  c
||||||||||||      ||||| ||||| |||||        |||||| |||||||| ||| |||||||||||| ||||   
ccagucguacuu      uacuu aagua uauua        aAGUAC AGUUAUGU ACG Cuguguguccgc ucuc  a
            ------     u     g     --------      A        C   A            -    cu 

Annotation confidence Not enough data

Genome context

Unknown

Mature pgi-miR6143b-5p

• Accession: MIMAT0027268
• Description: Panax ginseng pgi-miR6143b-5p mature miRNA
• Sequence: 56 - ACAAUGUCGACACGCAGGCGGAGA - 79
• Evidence: experimental ; Illumina [1]

Mature pgi-miR6143b-3p

• Accession: MIMAT0027269
• Description: Panax ginseng pgi-miR6143b-3p mature miRNA
• Sequence: 102 - CAGCACUGUAUUGAACAUGA - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22962612
   High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
   Wu B, Wang M, Ma Y, Yuan L, Lu S
   PLoS One (2012) 7:e44385