Stem-loop nta-MIR169e

Accession

MI0021361

Description

Nicotiana tabacum nta-MIR169e precursor miRNA

Literature search

4 open access papers mention nta-MIR169e
(15 sentences)

Sequence

gaguagauugcagccaaggaugacuugccgagauguuguagcuaaugcaacgacuuaucggcaggucguccuuggcuacauuuuacucucuucugcucauguaagucucugaaaugcauauauauaauucagagguaaaguuaucacacaucacauccaguugaauugcucacaauuugucuagagagucauugcaugaagagguagggaguggauugCAGCCAAGGAUGACUUGCCGAgauguuguagccaaugcaaugacuuaucggcaggucguccuuggcuacauuuuacucu
(((((((.((.((((((((((((((((((((...(((((.((....((.(((((...((((((((((((((((((((.((.(((((((((((((..(((((((((.((((.....(((......((((((((.((.....................))..)))))))).........)))....)))).).))))))))..))).)))))))))).)).))))))))))))))))))))...))))).))....)).)))))...)))))))))))))))))))).)).))))))).

Structure

-       u  c                    gau     a  uaau  a     uua                    a  u          -   gc        - u    gaaau   ---uauaua        -a  uaaaguuau 
 gaguaga ug agccaaggaugacuugccga   guugu gc    gc acgac   ucggcaggucguccuuggcu ca uuuacucucu ucu  ucauguaa g cucu     gca         uaauucag  gg         c
 ||||||| || ||||||||||||||||||||   ||||| ||    || |||||   |||||||||||||||||||| || |||||||||| |||  |||||||| | ||||     |||         ||||||||  ||         a
 cucauuu ac ucgguuccugcuggacggcu   cagua cg    cg uguug   AGCCGUUCAGUAGGAACCGA gu aggugaggga gga  aguacguu c gaga     ugu         guuaaguu  cc         c
u       u  a                    auu     a  uaac  a     uag                    C  u          u   ga        a u    -gauc   uuaacacuc        ga  uacacuaca 

Annotation confidence Not enough data

Genome context

Unknown

Mature nta-miR169e

• Accession: MIMAT0024671
• Description: Nicotiana tabacum nta-miR169e mature miRNA
• Sequence: 219 - CAGCCAAGGAUGACUUGCCGA - 239
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28