Stem-loop rno-mir-3075

Accession

MI0021842

Description

Rattus norvegicus rno-mir-3075 precursor miRNA

Sequence

414 reads, 3 reads per million, 210 experiments

cugcuauuuacucugcgguuuguacUGUCUGGGAGCAGCCAAGGACAAGuuaccucuugucuucuguccuuggccuuccuagguguccaagcucacgcaggcugggagccaga
(((((.((((.(((((((((((.((..((((((((..((((((((((....((.....))....)))))))))).)))))))).)).)))))...)))))).)))))).))).

Structure

-   -  a    c      ---     u  UG        CA          AGuu  c 
 cug cu uuua ucugcg   guuug ac  UCUGGGAG  GCCAAGGACA    ac u
 ||| || |||| ||||||   ||||| ||  ||||||||  ||||||||||    || c
 gac ga gggu ggacgc   cgaac ug  ggauccuu  cgguuccugu    ug u
a   c  -    c      acu     c  -u        -c          cuuc  u 

Annotation confidence Not enough data

Genome context

chr16: 1822805-1822917 [+]

Mature rno-miR-3075

• Accession: MIMAT0025057
• Description: Rattus norvegicus rno-miR-3075 mature miRNA
• Sequence: 26 - UGUCUGGGAGCAGCCAAGGACAAG - 49
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324