miRBase entry: bmo-mir-6497

Stem-loop bmo-mir-6497


Accession
MI0022087
Description
Bombyx mori bmo-mir-6497 precursor miRNA
Gene family
MIPF0001965; mir-6497


Sequence

895571 reads, 229115 reads per million, 3 experiments
ggauccguaacuucggaauaaggauugGCUCUGAGGACCGGGGCGUGUCggguuuggacgggaagcgGAUGCGGCCGGUGCCGGGUCUggucgauguucgugcguuauguucg
.((..((((((....(((((..((((((.((((.(.(((((..((((((.(.(((......))).).)))))).))))).))))).))))))..)))))....)))))).)).

Structure
g  uc      uucg     ag      C    A G     GG      g g   gg 
 ga  cguaac    gaaua  gauugG UCUG G ACCGG  CGUGUC g uuu  a
 ||  ||||||    |||||  |||||| |||| | |||||  |||||| | |||   
 cu  guauug    cuugu  cuggUC GGGC C UGGCC  GCGUAG c aag  c
g  -u      cgug     ag      U    - G     -G      g g   gg 


Annotation confidence Low
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Genome context
NW_004581711.1: 992217-992329 [+]

Database links

Mature bmo-miR-6497-5p

Accession MIMAT0025321
Description Bombyx mori bmo-miR-6497-5p mature miRNA
Sequence 28 - GCUCUGAGGACCGGGGCGUGUC - 49
Evidence experimental
SOLiD [1]

Mature bmo-miR-6497-3p

Accession MIMAT0025322
Description Bombyx mori bmo-miR-6497-3p mature miRNA
Sequence 68 - GAUGCGGCCGGUGCCGGGUCU - 88
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 22662121
    Transposable-element associated small RNAs in Bombyx mori genome
    Cai Y, Zhou Q, Yu C, Wang X, Hu S, Yu J, Yu X
    PLoS One (2012) 7:e36599