Stem-loop ghr-MIR7484b

Accession

MI0024167

Description

Gossypium hirsutum ghr-MIR7484b precursor miRNA

Gene family

MIPF0001667; MIR7484

Literature search

1 open access papers mention ghr-MIR7484b
(2 sentences)

Sequence

auuauaaauuUUUGUAUAUUAGAUCAAAGAGCAAaugauccuuguguuaaaauuuucaucuauucuccuauauaaauuaguaaggguaggucaccaugagguccccagggcauaucaggugucauuauuuauccaauucccccagucacuucaguuuuuaucaguauaaauggaugcaauuuuuacccaaaaaaauggauugcuucuuuaaucuaauuuauagggauuaaacua
......((((((((((.(((((((.((((((((....(((((((.((.((((((..((((((((...(((((.((((((((..((((((((((((.(((.((((...))))...))))))).....)))))))).............)))..))))).))).))....)))))))).)))))).)).)))......))))))).))))).))))))).))))))))))......

Structure

auuaua          U       C     -   Aaug    ------   u  u      uu        -cuc  -   u     --   -----------aa        -----    a   --g    c 
      aauuUUUGUA AUUAGAU AAAGA GCA    aucc      uug gu aaaauu  caucuauu    cu aua aaauu  agu             ggguaggu     cacc uga   gucc  
      |||||||||| ||||||| ||||| |||    ||||      ||| || ||||||  ||||||||    || ||| |||||  |||             ||||||||     |||| |||   |||| c
      uuagggauau uaaucua uuucu cgu    uagg      aac ca uuuuaa  guagguaa    ga uau uuuga  uca             ccuauuua     gugg acu   cggg  
aucaaa          u       a     u   ----    uaaaaa   c  u      -c        auau  c   u     cu   cugacccccuuaa        uuacu    -   aua    a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR7484b

• Accession: MIMAT0029125
• Description: Gossypium hirsutum ghr-miR7484b mature miRNA
• Sequence: 11 - UUUGUAUAUUAGAUCAAAGAGCAA - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900