miRBase entry: prd-mir-7887

Stem-loop prd-mir-7887

Accession

MI0025593

Description

Panagrellus redivivus prd-mir-7887 precursor miRNA

Sequence

GGGGUGGAUAAGGAGACGAGUACCacgcuugauagguguggUACCCGUUCUCCGUCAUCCUUCC
.(((.((((..(((((((.(((((((((((...))))))))))).)).)))))...)))).)))

Structure

G   U    -AA     -  A           g 
 GGG GGAU   GGAGA CG GUACCacgcuu  
 ||| ||||   ||||| || ||||||||||| a
 CCU CCUA   CCUCU GC CAUggugugga  
-   U    CUG     U  C           u

Annotation confidence Not enough data

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Genome context

KB455029.1: 471460-471523 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7887

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-7887-5p

Accession	MIMAT0030544
Description	Panagrellus redivivus prd-miR-7887-5p mature miRNA
Sequence	1 - GGGGUGGAUAAGGAGACGAGUACC - 24
Evidence	experimental Illumina [1]

Mature prd-miR-7887-3p

Accession	MIMAT0030545
Description	Panagrellus redivivus prd-miR-7887-3p mature miRNA
Sequence	42 - UACCCGUUCUCCGUCAUCCUUCC - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295