miRBase entry: prd-mir-7966a

Stem-loop prd-mir-7966a

Accession

MI0025619

Description

Panagrellus redivivus prd-mir-7966a precursor miRNA

Sequence

CACGUCGAUGAUGUAUCCUCAGCguacauaaugucacugcUGAGGUACUUCUUUUACGUGUA
(((((.((.((.(((.((((((((((((...))).)).)))))))))).)).)).)))))..

Structure

--     C  U  U   U       -  -   u 
  CACGU GA GA GUA CCUCAGC gu aca  
  ||||| || || ||| ||||||| || ||| a
  GUGCA UU CU CAU GGAGUcg ca ugu  
AU     U  U  U   -       u  c   a

Annotation confidence Not enough data

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Genome context

KB455323.1: 202407-202468 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from prd-mir-7966a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-7966a-5p

Accession	MIMAT0030596
Description	Panagrellus redivivus prd-miR-7966a-5p mature miRNA
Sequence	1 - CACGUCGAUGAUGUAUCCUCAGC - 23
Evidence	experimental Illumina [1]

Mature prd-miR-7966a-3p

Accession	MIMAT0030597
Description	Panagrellus redivivus prd-miR-7966a-3p mature miRNA
Sequence	41 - UGAGGUACUUCUUUUACGUGUA - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295