Stem-loop prd-mir-7949

Accession

MI0025705

Description

Panagrellus redivivus prd-mir-7949 precursor miRNA

Sequence

CGAGUCUGACCGGGCGUAAGCUuguaaaguaauagUUUGCGACCGGAAUGAUUCUU
.(((((...((((.((((((((...........)))))))).))))...)))))..

Structure

-C     UGA    G        ugua 
  GAGUC   CCGG CGUAAGCU    a
  |||||   |||| ||||||||    a
  CUUAG   GGCC GCGUUUga    g
UU     UAA    A        uaau 

Annotation confidence Not enough data

Genome context

KB455157.1: 45984-46039 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from prd-mir-7949

Mature prd-miR-7949-5p

• Accession: MIMAT0030768
• Description: Panagrellus redivivus prd-miR-7949-5p mature miRNA
• Sequence: 1 - CGAGUCUGACCGGGCGUAAGCU - 22
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7949-3p

• Accession: MIMAT0030769
• Description: Panagrellus redivivus prd-miR-7949-3p mature miRNA
• Sequence: 36 - UUUGCGACCGGAAUGAUUCUU - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295