miRBase entry: hbv-mir-B19

Stem-loop hbv-mir-B19

Accession

MI0026323

Description

Herpes B virus hbv-mir-B19 precursor miRNA

Sequence

uugGUGGGCGCACUCGAUCCCGGCUguccuccccucgcgcggcggaucggguccgcgcuaccgg
.(((((((((.(((((((((..(((((.(.......).)))))))))))))).))).)))))).

Structure

u      -   C         CG     c uc 
 ugGUGG GCG ACUCGAUCC  GCUgu c  c
 |||||| ||| |||||||||  ||||| |  c
 gccauc cgc ugggcuagg  cggcg g  c
g      g   c         --     c cu

Annotation confidence Not enough data

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Genome context

NC_004812: 600-663 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from hbv-mir-B19

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hbv-miR-B19-5p

Accession	MIMAT0031769
Description	Herpes B virus hbv-miR-B19-5p mature miRNA
Sequence	4 - GUGGGCGCACUCGAUCCCGGCU - 25
Evidence	experimental Illumina [1]

References

PubMed ID: 21543500
Identification and expression analysis of herpes B virus-encoded small RNAs
"Amen MA, Griffiths A"
"J Virol (2011) 85:7296-7311