Stem-loop cpa-MIR160a

Accession

MI0026337

Description

Carica papaya cpa-MIR160a precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

3 open access papers mention cpa-MIR160a
(5 sentences)

Sequence

UGCCUGGCUCCCUGUAUGCCAucugcaaagcgcccaucaggagugguggccuugguggauggcgugcgaggagccaugcaug
(((.(((((((.((((((((((((((.(((.(((.((((....)))))))))).)))))))))))))).))))))).)))..

Structure

--   C       C              a   c   c    g 
  UGC UGGCUCC UGUAUGCCAucugc aag gcc auca g
  ||| ||||||| |||||||||||||| ||| ||| ||||  
  acg accgagg gcgugcgguaggug uuc cgg uggu a
gu   u       a              g   -   -    g 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR160a

• Accession: MIMAT0031783
• Description: Carica papaya cpa-miR160a mature miRNA
• Sequence: 1 - UGCCUGGCUCCCUGUAUGCCA - 21
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682