Stem-loop cpa-MIR166c

Accession

MI0026350

Description

Carica papaya cpa-MIR166c precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

3 open access papers mention cpa-MIR166c
(9 sentences)

Sequence

ggaaugcugucugguucgagaccauucauuaauucaaacuaagcuuaauuugaagauugaguucauuguccaucuccucuuaauuagugaucUCGGACCAGGCUUCAUUCCCC
((((((..(((((((((((((....((((((((((((....(((((((((....)))))))))..))).............))))))))))))))))))))))..))))))..

Structure

--      cu             ccau         -------------   acua         u 
  ggaaug  gucugguucgaga    ucauuaauu             caa    agcuuaauu g
  ||||||  |||||||||||||    |||||||||             |||    |||||||||  
  CCUUAC  CGGACCAGGCUcu    agugauuaa             guu    uugaguuag a
CC      UU             ----         uucuccucuaccu   --ac         a 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR166c

• Accession: MIMAT0031798
• Description: Carica papaya cpa-miR166c mature miRNA
• Sequence: 93 - UCGGACCAGGCUUCAUUCCCC - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682