Stem-loop pxy-mir-2a

Accession

MI0027310

Description

Plutella xylostella pxy-mir-2a precursor miRNA

Gene family

MIPF0000049; mir-2

Literature search

2 open access papers mention pxy-mir-2a
(5 sentences)

Sequence

121 reads, 5145 reads per million, 4 experiments

auauugaauccggugaagGCAGCAAAGCGGCUGUGACUUAUGucuuccauaucaUAUCACAGCCAGCUUUGUUGACUuuacugauuugaauu
...(((((((.(((((((.(((((((((((((((((..((((..........)))))))))))).))))))))).))))))))))))))...

Structure

aua       c       G         -        CU    ucuu 
   uugaauc ggugaag CAGCAAAGC GGCUGUGA  UAUG    c
   ||||||| ||||||| ||||||||| ||||||||  ||||     
   aguuuag ucauuUC GUUGUUUCG CCGACACU  AUac    c
uua       -       A         A        --    uaua 

Annotation confidence High

Genome context

scaffold_168: 3771-3862 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pxy-mir-2a

Mature pxy-miR-2a-5p

• Accession: MIMAT0033717
• Description: Plutella xylostella pxy-miR-2a-5p mature miRNA
• Sequence: 19 - GCAGCAAAGCGGCUGUGACUUAUG - 42
• Evidence: experimental ; Illumina [1]

Mature pxy-miR-2a-3p

• Accession: MIMAT0033718
• Description: Plutella xylostella pxy-miR-2a-3p mature miRNA
• Sequence: 55 - UAUCACAGCCAGCUUUGUUGACU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24236051
   Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
   Liang P, Feng B, Zhou X, Gao X
   PLoS One (2013) 8:e78787