miRBase entry: atr-MIR8574

Stem-loop atr-MIR8574


Accession
MI0027459
Description
Amborella trichopoda atr-MIR8574 precursor miRNA


Sequence

75 reads, 638 reads per million, 4 experiments
ucauguacuuuggauuucaaauugugugguugcaagagggucauuuaaaaugacucaaaaguuaaaaaaaauaaauuuauugaacuuuaugacuaguuuaaaccauccaauuugACAUCUUAUGAGUAAGAGUGAUUGuaaccuuuuuguaauaaaaacaagauauuguauacaaugagacuauugauauuuuauuauaagaaugucacaaucacuuuuacuuauuagaugucaaauuagauggcuugcguuaaucauggaguucggaauuuuuuuuuuuuaacuuuagaucuuuuugaagacgucguuacaacuacucauuuugaaauucaaaggauauga
((((((.((((((((((((((.((.(((((((.((..(.(((.(((((((.((.((.((((((((((((((.((((((..((((((((((((.((((.(((.(((((.((((((((((((.((((((((((((((((((.((.((((((((((((((((((....))))...(((((....)))))...)))))))))))))).)).)))))))))))))))))).)))))))))))).))))).))).)))).)))))))))))))))))).)))))))))))))).)))).)))))))))).)..)).))))))).)).)))))))))))))).))))))

Structure
      a              u  u       c  ga g   a       u  c  a              u      au            c    u   a     c            U                  a  c              acaagauauuguaua     a 
ucaugu cuuuggauuucaaa ug gugguug aa  g guc uuuaaaa ga uc aaaguuaaaaaaaa aaauuu  ugaacuuuauga uagu uaa ccauc aauuugACAUCU AUGAGUAAGAGUGAUUGu ac uuuuuguaauaaaa               caaug g
|||||| |||||||||||||| || ||||||| ||  | ||| ||||||| || || |||||||||||||| ||||||  |||||||||||| |||| ||| ||||| |||||||||||| |||||||||||||||||| || ||||||||||||||               |||||  
aguaua gaaacuuaaaguuu ac caucaac uu  u cag aaguuuu cu ag uuucaauuuuuuuu uuuaag  gcuugagguacu auug guu gguag uuaaacuguaga uauucauuuucacuaaca ug aagaauauuauuuu               guuau a
      g              u  u       a  gc g   -       u  -  a              u      --            a    c   c     a            u                  c  u              ------------aua     c 


Annotation confidence Not enough data
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Genome context
scaffold00029: 3795409-3795750 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from atr-MIR8574
Name Accession Chromosome Start End Strand Confidence




Database links

Mature atr-miR8574

Accession MIMAT0033857
Description Amborella trichopoda atr-miR8574 mature miRNA
Sequence 115 - ACAUCUUAUGAGUAAGAGUGAUUG - 138
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089