miRBase entry: atr-MIR8606

Stem-loop atr-MIR8606


Accession
MI0027495
Description
Amborella trichopoda atr-MIR8606 precursor miRNA


Sequence

206 reads, 127 reads per million, 2 experiments
uccaccgauucuccgauuugacauggguaugggugugacuaauacgagUCACCGAUCCGUUUUUUUAAACCUugguuucaccauguucccuugacuugugaaugggaucuaaccauuauacuaagaaauccaugacuuuugucauugugaauaccaagguuuaagaaaaaggaucggugacucgaaucagucacacuuauacccauguuggauuagagaaucggugga
(((((((((((((.((((((((((((((((((((((((((.((.((((((((((((((.((((((((((((((((((((((((........)).(((((((((((.......))))).))).)))......(((((....))))).))))).))))))))))))))))).)))))))))))))).)).)))))))))))))))))))))))))).)))))))))))))

Structure
             c                          a  a              G                 -     --------cauguucccuuga   -   -     ga 
uccaccgauucuc gauuugacauggguaugggugugacu au cgagUCACCGAUCC UUUUUUUAAACCUuggu uucac                     cuu gug aaugg  u
||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||                     ||| ||| |||||  c
agguggcuaagag uuagguuguacccauauucacacuga ua gcucaguggcuagg aaaagaauuuggaacca aagug                     gaa cau uuacc  u
             a                          c  a              a                 u     uuacuguuuucaguaccuaaa   u   a     aa 


Annotation confidence Not enough data
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Genome context
scaffold00140: 438128-438355 [-]

Database links

Mature atr-miR8606

Accession MIMAT0033895
Description Amborella trichopoda atr-miR8606 mature miRNA
Sequence 49 - UCACCGAUCCGUUUUUUUAAACCU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089