Stem-loop atr-MIR156b

Accession

MI0027506

Description

Amborella trichopoda atr-MIR156b precursor miRNA

Gene family

MIPF0000008; MIR156

Sequence

211 reads, 527 reads per million, 4 experiments

uggugauagugcacguaagguauguugguuguguaugauagagaagaggaggUGACAGAAGAGAGUGAGCACauauggccuuucuugcaccgagucgaugcuugaaguuaugcgugcuuacuuucuaucugucacuucgccaccaacaccacacaucaccg
.((((((.(((.......(((..((((((.((................((((((((((((((((((((((((.((((((..(((..(((.((...)).)))..))))))))).))))))))))))).))))))))))))).))))))))).))))))))).

Structure

u      a   cacguaa   au      u  guaugauagagaagag           -             a      cu   uu   c  a 
 ggugau gug       ggu  guuggu gu                gaggUGACAGA AGAGAGUGAGCAC uauggc  uuc  gca cg  
 |||||| |||       |||  |||||| ||                ||||||||||| ||||||||||||| ||||||  |||  ||| || g
 ccacua cac       cca  caacca cg                cuucacugucu ucuuucauucgug guauug  aag  cgu gc  
g      -   ------a   --      c  ----------------           a             c      --   uu   a  u 

Annotation confidence Not enough data

Genome context

scaffold00052: 3292164-3292324 [-]

Mature atr-miR156b

• Accession: MIMAT0033908
• Description: Amborella trichopoda atr-miR156b mature miRNA
• Sequence: 53 - UGACAGAAGAGAGUGAGCAC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089