Stem-loop esi-MIR8622c

Accession

MI0027560

Description

Ectocarpus siliculosus esi-MIR8622c precursor miRNA

Gene family

MIPF0001931; MIR8622

Sequence

ccgaaacugggccggaaccaagcggcauccaacauuggucucagccgugcucgccgcgacugaccccaaucuccugaacugcggguguagagcaguagcugaugccacuagcuacugcuggcacuccguccguucaggggcuuacgguccguggcggugaguauggcugugaaaaauauuggaugccgcUUGGUUCCGGCGUAGAUCucgg
((((..(((.((((((((((((((((((((((.(((..((.((((((((((((((((.((.((((..((.(((((((((.((((((((..(((((((((((.......))))))))))).)))).))))..))))))))).))..)))).)).)))))))))))))))).))..))).)))))))))))))))))))))).)))...))))

Structure

    -aa   g                      c   gg  u                g  u    cc  u         -u    -    ag           au 
ccga   cug gccggaaccaagcggcauccaa auu  uc cagccgugcucgccgc ac gacc  aa cuccugaac  gcgg gugu  agcaguagcug  g
||||   ||| |||||||||||||||||||||| |||  || |||||||||||||||| || ||||  || |||||||||  |||| ||||  |||||||||||  c
ggcu   GAU CGGCCUUGGUUcgccguagguu uaa  ag gucgguaugaguggcg ug cugg  uu ggggacuug  ugcc cacg  ucgucaucgau  c
    CUA   G                      a   aa  u                g  c    ca  c         cc    u    -g           ca 

Annotation confidence Not enough data

Genome context

sctg_230: 61531-61741 [-]

Mature esi-miR8622c

• Accession: MIMAT0033963
• Description: Ectocarpus siliculosus esi-miR8622c mature miRNA
• Sequence: 190 - UUGGUUCCGGCGUAGAUC - 207
• Evidence: experimental ; qPCR [1]

References

1. PubMed ID: 24078085
   Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus
   "Billoud B, Nehr Z, Le Bail A, Charrier B"
   "Nucleic Acids Res (2014) 42:417-429